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update CHANGELOG
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maxulysse committed Jun 13, 2022
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Expand Up @@ -84,7 +84,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#524](https://github.com/nf-core/sarek/pull/524) - Fix intervals usage by counting the actual list of scatter/gather files produced and not overall number of intervals
- [#549](https://github.com/nf-core/sarek/pull/549) - Fix unique lanes required for Freebayes: issue [#311](https://github.com/nf-core/sarek/issues/311), replaces `meta.clone()` with actual copy of map to avoid issues with <https://nfcore.slack.com/archives/C027CM7P08M/p1644241819942339>
- [#567](https://github.com/nf-core/sarek/pull/567) - Fix interval name resolving during scatter/gather by moving logic to modules.config causing name to be correctly resolved on process execution; also fixed duplicate naming when variant callers produce multiple vcf files by adding field `type` to `meta` map
- [#585](https://github.com/nf-core/sarek/pull/585) - Fix Spark usage for GATK4 modules.
- [#585](https://github.com/nf-core/sarek/pull/585) - Fix Spark usage for GATK4 modules
- [#587](https://github.com/nf-core/sarek/pull/587) - Fix issue with VEP extra files

### Deprecated

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