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Dev#473

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nickhsmith wants to merge 19 commits intonf-core:devnf-core/sarek:devfrom nickhsmith:devnickhsmith/sarek:devCopy head branch name to clipboard

+308-360

Commits

Commits on Dec 13, 2021

• fix interval name and boolean flag

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  Smith Nicholas

  committed
  7d5cf38

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• merge nf-core-dev -> nickhsmith/dev

  

  Smith Nicholas

  committed
  5f16086

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• Merge branch 'nf-core-dev' into dev

  

  Smith Nicholas

  committed
  4f1b0ff

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• rename preparerecalibration and variantcalling

  

  Smith Nicholas

  committed
  4d393e3

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• rearrange gatk haplotypecaller args

  

  Smith Nicholas

  committed
  27910ec

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• fix type interval_bed -> intervals_bed

  

  Smith Nicholas

  committed
  7fb49a9

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• don't assume '_' in name, take all vcf.gz

  

  Smith Nicholas

  committed
  a897993

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• remove old params, set somee string defaults to null

  

  Smith Nicholas

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  b101310

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Commits on Dec 14, 2021

• Update .gitignore

  nickhsmith

  authored
  d0947c0

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• Update conf/modules.config

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  nickhsmith

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  FriederikeHanssen

  authored
  3a4fc9c

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• Update conf/modules.config

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  nickhsmith

  and

  FriederikeHanssen

  authored
  73b38fd

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Commits on Jan 5, 2022

• update germline interval naming

  

  Smith Nicholas

  committed
  b767659

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• Merge branch 'dev' of github.com:nickhsmith/sarek into dev

  

  Smith Nicholas

  committed
  eaaa55a

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Commits on Jan 12, 2022

• update nf-core-branch

  

  Smith Nicholas

  committed
  bbd7757

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• Merge branch 'nf-core-dev' into dev

  

  Smith Nicholas

  committed
  8cb7490

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Commits on Jan 14, 2022

• fix to match nf-core updates

  

  Smith Nicholas

  committed
  1e5034e

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Commits on Feb 14, 2022

• update

  

  Smith Nicholas

  committed
  eee70d0

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• merge with nf-core-dev

  

  Smith Nicholas

  committed
  07aa343

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• Merge pull request #5 from nickhsmith/nf-core-dev

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  nickhsmith

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  7895433

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