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    18 repositories

    • langchain4j

      Public
      Java version of LangChain
      Java
      •
      Apache License 2.0
      •1.1k•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • langgraph4j

      Public
      🚀 LangGraph for Java. A library for building stateful, multi-actor applications with LLMs, built for work jointly with langchain4j
      Java
      •
      MIT License
      •47•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • cromwell

      Public
      Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •360•0•0•0•Updated Jun 24, 2024Jun 24, 2024

    • console-icons

      Public
      Repository for graphics used on the SeqsLab management console home page (https://console.seqslab.net/)
      0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • htsjdk

      Public
      A Java API for high-throughput sequencing data (HTS) formats.
      Java
      •244•0•0•0•Updated Jan 10, 2023Jan 10, 2023

    • adam

      Public
      ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
      Scala
      •
      Apache License 2.0
      •311•0•0•0•Updated Oct 20, 2022Oct 20, 2022

    • AnomeINDEL

      Public
      Identifying Long Indels from BAM
      Python
      •0•0•0•0•Updated Nov 30, 2021Nov 30, 2021

    • seqslabapps

      Public
      JavaScript
      •0•0•0•1•Updated May 11, 2021May 11, 2021

    • aztk-backup

      Public
      AZTK powered by Azure Batch: On-demand, Dockerized, Spark Jobs on Azure
      Python
      •
      MIT License
      •66•0•0•1•Updated Feb 17, 2021Feb 17, 2021

    • hdfscontents

      Public
      A HDFS-backed ContentsManager implementation for IPython
      Python
      •
      Apache License 2.0
      •13•0•0•0•Updated Aug 20, 2020Aug 20, 2020

    • pydoop

      Public
      A Python MapReduce and HDFS API for Hadoop
      Python
      •
      Apache License 2.0
      •59•0•0•0•Updated Jul 29, 2020Jul 29, 2020

    • docs-ui

      Public
      Customized UI bundle for the Antora documentation site
      0•0•0•0•Updated Jul 9, 2020Jul 9, 2020

    • deepvariant

      Public
      DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •738•0•0•0•Updated Mar 14, 2019Mar 14, 2019

    • tensorflow

      Public
      Computation using data flow graphs for scalable machine learning
      C++
      •
      Apache License 2.0
      •75k•0•0•0•Updated Aug 27, 2018Aug 27, 2018

    • sga

      Public
      de novo sequence assembler using string graphs
      C++
      •82•0•0•0•Updated Mar 9, 2018Mar 9, 2018

    • svaba

      Public
      Structural variation and indel detection by local assembly
      C++
      •
      GNU General Public License v3.0
      •46•0•0•0•Updated May 18, 2017May 18, 2017

    • bdg-formats

      Public
      Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
      Shell
      •
      Apache License 2.0
      •35•0•0•0•Updated Jul 26, 2016Jul 26, 2016

    • utils

      Public
      General (non-omics) code used across BDG products. Apache 2 licensed.
      Scala
      •
      Apache License 2.0
      •26•0•0•0•Updated Jun 6, 2016Jun 6, 2016