Repositories list

• web-cytoscape-manual

  Public
  Holds documentation for Cytoscape Web

  Makefile

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• cytoscape-web

  Public
  TypeScript

  •

  MIT License

  •7•9•1•2•Updated Feb 25, 2025Feb 25, 2025

• cytoscape.js

  Public
  Graph theory (network) library for visualisation and analysis

  networkcytoscapejsjavascript+ 3analysisvisualisationgraph-theory

  JavaScript

  •

  MIT License

  •1.6k•10k•8•3•Updated Feb 25, 2025Feb 25, 2025

• iregulon-webapp

  Public
  JavaScript

  •

  MIT License

  •0•1•13•0•Updated Feb 25, 2025Feb 25, 2025

• network-ptm-integration

  Public
  This repo tracks the work of data-driven addition of phosphorylation sites to proteins in networks (and pathways).

  R

  •

  MIT License

  •0•0•3•0•Updated Feb 19, 2025Feb 19, 2025

• cytoscape-automation

  Public
  Collection of scripts that include programmatic io and control of Cytoscape

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •58•85•13•10•Updated Feb 19, 2025Feb 19, 2025

• cytoscape.js-compound-drag-and-drop

  Public
  Compound node drag-and-drop UI for adding and removing children

  JavaScript

  •

  MIT License

  •16•33•1•1•Updated Feb 18, 2025Feb 18, 2025

• cytoscape.js-popper

  Public
  A wrapper for Popper.js that lets you position divs relative to Cytoscape elements

  JavaScript

  •

  MIT License

  •23•100•0•1•Updated Feb 15, 2025Feb 15, 2025

• cytoscape-impl

  Public
  Cytoscape 3 implementation bundles.

  Java

  •

  GNU Lesser General Public License v2.1

  •40•37•0•0•Updated Feb 13, 2025Feb 13, 2025

• cytoscape.js-dagre

  Public
  The Dagre layout for DAGs and trees for Cytoscape.js

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •83•254•0•2•Updated Feb 13, 2025Feb 13, 2025

• cytoscape.js-cxtmenu

  Public
  Context menu for Cytoscape.js

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •83•168•0•1•Updated Feb 13, 2025Feb 13, 2025

• cytoscape.js-klay

  Public
  The Klay layout algorithm for Cytoscape.js

  JavaScript

  •

  MIT License

  •42•89•0•1•Updated Feb 13, 2025Feb 13, 2025

• cytoscape.js-cola

  Public
  The Cola.js physics simulation layout for Cytoscape.js

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •67•156•0•1•Updated Feb 13, 2025Feb 13, 2025

• cytoscape.js-automove

  Public
  An extension for Cytoscape.js that automatically updates node positions based on specified rules

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •11•34•0•1•Updated Feb 12, 2025Feb 12, 2025

• cytoscape.js-edgehandles

  Public
  Edge creation UI extension for Cytoscape.js

  cytoscapejscytoscapejs-extension

  HTML

  •

  MIT License

  •86•171•0•1•Updated Feb 12, 2025Feb 12, 2025

• cx

  Public
  CX serialization and de-serialization in Cytoscape

  Java

  •1•3•8•1•Updated Feb 10, 2025Feb 10, 2025

• cy-ndex-2

  Public
  A Cytoscape client app for the NDEx database

  Java

  •

  MIT License

  •2•0•19•3•Updated Feb 8, 2025Feb 8, 2025

• enrichment-map-webapp

  Public
  JavaScript

  •

  MIT License

  •0•6•35•1•Updated Feb 6, 2025Feb 6, 2025

• cytoscape-web-app-examples

  Public
  (Experimental) Example apps for Cytoscape Web

  TypeScript

  •

  MIT License

  •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

• cytocontainer-rest-model

  Public
  Java

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• cytocontainer-rest-server

  Public
  Java

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• json

  Public
  Core App: JSON support

  Java

  •2•0•0•2•Updated Jan 30, 2025Jan 30, 2025

• js4cytoscape

  Public
  JavaScript library for calling Cytoscape Automation via CyREST

  JavaScript

  •

  MIT License

  •4•4•1•0•Updated Jan 27, 2025Jan 27, 2025

• cytoscape-tutorials

  Public
  Collection of modular Cytoscape tutorials for online presentation using reveal.js

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •118•316•26•13•Updated Jan 24, 2025Jan 24, 2025

• fgsea-service

  Public
  R

  •

  MIT License

  •0•3•0•0•Updated Jan 20, 2025Jan 20, 2025

• cytoscape.js-blog

  Public
  The Cytoscape.js blog, using Github pages and Jekyll

  JavaScript

  •

  MIT License

  •50•18•1•4•Updated Jan 13, 2025Jan 13, 2025

• ipycytoscape

  Public
  A Cytoscape Jupyter widget

  binderjupyter-notebookcytoscape

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •63•269•60•14•Updated Jan 6, 2025Jan 6, 2025

• cytoscape-manual

  Public
  Markdown version of Cytoscape manual

  Creative Commons Zero v1.0 Universal

  •23•11•0•0•Updated Dec 5, 2024Dec 5, 2024

• cytoscape-admin-scripts

  Public
  Build and maintenance scripts for Cytoscape core developers.

  Jupyter Notebook

  •5•2•1•0•Updated Dec 4, 2024Dec 4, 2024

• cytoscape-pmcfigurebot

  Public archive
  Query figures indexed by PubMed Central and collect metadata

  R

  •

  Creative Commons Zero v1.0 Universal

  •4•1•0•0•Updated Dec 1, 2024Dec 1, 2024