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feat(plots): plot inferred time-clonal fate potency correlation #647

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feat(plots): plot inferred time-clonal fate potency correlation #647

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@cameronraysmith cameronraysmith commented Aug 23, 2024 •
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@cameronraysmith cameronraysmith added the skip-ci Skip CI workflow label Aug 23, 2024
@cameronraysmith cameronraysmith self-assigned this Aug 23, 2024
@cameronraysmith cameronraysmith added this to the 0.4.x milestone Aug 23, 2024
@cameronraysmith cameronraysmith added skip-ci Skip CI workflow enhancement New feature or request python Pull requests that update Python code and removed skip-ci Skip CI workflow labels Aug 23, 2024
@cameronraysmith cameronraysmith linked an issue Aug 24, 2024 that may be closed by this pull request
add plots module for cell fate metrics comparison #621
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@cameronraysmith
refactor(tasks): move load data function to utils
0adac20 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(utils): add function to compute file hashes
7ede4bc 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): type-check get clone trajectory function
7f438b3 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): use pandas regex str replacement in lineage fate correlation
34cfd15 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
refactor(plots): archive unused code from get clone trajectory
b7eadc4 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(styles): add module for explicit specification of colors
7622639 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): parameterize posterior time color map
155a131 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
nit(plots): update comments
81c5edf 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): include time and angle uncertainty
f45f308 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(tasks): draft time fate correlation task
d07e961 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): disable transparency in lineage fate correlation
ff63d31 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith cameronraysmith added skip-tests Skip Tests in CI workflow docs-preview toggle docs preview on PRs and removed build-images Control image build on PRs skip-ci Skip CI workflow labels Mar 2, 2025
@cameronraysmith
fix(cid): separate docs preview and publish
745c0b0 
- reference reusable workflow

Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith cameronraysmith added skip-ci Skip CI workflow build-images Control image build on PRs and removed docs-preview toggle docs preview on PRs skip-ci Skip CI workflow labels Mar 2, 2025
@cameronraysmith
fix(flake): override ghcr ids
4fb9151 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(flake): remove extra ghcr params
a212fb7 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(flake): reenable manifest github data
f92d066 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
test(constants): enable demo flag
474b7a8 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
test(workflows): reenable simulated data
c3e5e13 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
test(workflows): reset cache 2024.8.15 -> 2025.3.2
f0381f2 
reset to `*.0`

```
POSTPROCESS_CACHE_VERSION = f"{CACHE_VERSION}.2"
SUMMARIZE_CACHE_VERSION = f"{CACHE_VERSION}.3"
UPLOAD_CACHE_VERSION = f"{CACHE_VERSION}.7"
LINEAGE_FATE_CORRELATION_CACHE_VERSION = f"{CACHE_VERSION}.5"
COMBINE_METRICS_CACHE_VERSION = f"{CACHE_VERSION}.5"
```

Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith cameronraysmith added skip-ci Skip CI workflow execute-workflow Control workflow execution on PRs dev-mode Do not rebuild images and use branch name instead of git short SHA for image tags and removed build-images Control image build on PRs skip-ci Skip CI workflow labels Mar 3, 2025
@cameronraysmith cameronraysmith removed the dev-mode Do not rebuild images and use branch name instead of git short SHA for image tags label Mar 3, 2025
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