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brew install qt5
# make sure to add all the environment variables to your .zshrc# as described at the end of the output of the brew install command# then reload your shell:
zsh
create environment with mamba (conda should work as well, but I haven't tested it)mamba create -f environment.yaml -n pertpy-apple-siliconmamba activate pertpy-apple-siliconpip install pyqt5 --config-settings --confirm-license= --verbosepip install ete3pip install git+https://github.com/theislab/pertpy.git
Additional context
Bug in pertpy/tools/init.py#L10
There are faulty import paths getting masked by the catching of the ImportError for the ete3 warning.
from pertpy.tools.coda._sccoda import Sccoda works fine.
Describe the bug
To Reproduce
Steps to reproduce the behavior:
pyqt5
,ete3
andpertpy
import ete3
works fineimport pertpy as pt
-> shows warning for ete3Actual behaviour
Warning appears:
Expected behavior
No warning when
ete3
available.System [please complete the following information]:
Additional context
Bug in pertpy/tools/init.py#L10
There are faulty import paths getting masked by the catching of the ImportError for the ete3 warning.
from
pertpy.tools.coda._sccoda import Sccoda
works fine.Follow up on #201
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