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tesselle · Jul 30, 2024 · ea38971 · ea38971
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diff --git a/CITATION.cff b/CITATION.cff
@@ -8,8 +8,48 @@ message: 'To cite package "dimensio" in publications use:'
 type: software
 license: GPL-3.0-or-later
 title: 'dimensio: Multivariate Data Analysis'
-version: 0.8.0
+version: 0.8.1
 doi: 10.5281/zenodo.4478530
+identifiers:
+- description: The concept DOI.
+  type: doi
+  value: 10.5281/zenodo.4478530
+- description: The versioned DOI for version 0.1.0.
+  type: doi
+  value: 10.5281/zenodo.4478531
+- description: The versioned DOI for version 0.2.0.
+  type: doi
+  value: 10.5281/zenodo.4709122
+- description: The versioned DOI for version 0.2.1.
+  type: doi
+  value: 10.5281/zenodo.4769401
+- description: The versioned DOI for version 0.2.2.
+  type: doi
+  value: 10.5281/zenodo.5515458
+- description: The versioned DOI for version 0.3.0.
+  type: doi
+  value: 10.5281/zenodo.6993004
+- description: The versioned DOI for version 0.3.1.
+  type: doi
+  value: 10.5281/zenodo.7798592
+- description: The versioned DOI for version 0.4.0.
+  type: doi
+  value: 10.5281/zenodo.8277200
+- description: The versioned DOI for version 0.4.1.
+  type: doi
+  value: 10.5281/zenodo.10022325
+- description: The versioned DOI for version 0.5.0.
+  type: doi
+  value: 10.5281/zenodo.10207582
+- description: The versioned DOI for version 0.6.0.
+  type: doi
+  value: 10.5281/zenodo.10696035
+- description: The versioned DOI for version 0.7.0.
+  type: doi
+  value: 10.5281/zenodo.10948604
+- description: The versioned DOI for version 0.8.0.
+  type: doi
+  value: 10.5281/zenodo.11518715
 abstract: 'Simple Principal Components Analysis (PCA) and (Multiple) Correspondence
   Analysis (CA) based on the Singular Value Decomposition (SVD). This package provides
   S4 classes and methods to compute, extract, summarize and visualize results of multivariate
@@ -34,7 +74,7 @@ preferred-citation:
   institution:
     name: Université Bordeaux Montaigne
     address: Pessac, France
-  notes: R package version 0.8.0
+  notes: R package version 0.8.1
   doi: 10.5281/zenodo.4478530
   url: https://packages.tesselle.org/dimensio/
 repository: https://CRAN.R-project.org/package=dimensio
@@ -75,7 +115,8 @@ references:
     orcid: https://orcid.org/0000-0001-5759-4944
     affiliation: Université Bordeaux Montaigne
   year: '2024'
-  version: '>= 1.6.0'
+  doi: 10.32614/CRAN.package.arkhe
+  version: '>= 1.7.0'
 - type: software
   title: graphics
   abstract: 'R: A Language and Environment for Statistical Computing'
@@ -86,6 +127,7 @@ references:
     name: R Foundation for Statistical Computing
     address: Vienna, Austria
   year: '2024'
+  doi: 10.32614/CRAN.package.graphics
 - type: software
   title: grDevices
   abstract: 'R: A Language and Environment for Statistical Computing'
@@ -96,20 +138,11 @@ references:
     name: R Foundation for Statistical Computing
     address: Vienna, Austria
   year: '2024'
-- type: software
-  title: methods
-  abstract: 'R: A Language and Environment for Statistical Computing'
-  notes: Imports
-  authors:
-  - name: R Core Team
-  institution:
-    name: R Foundation for Statistical Computing
-    address: Vienna, Austria
-  year: '2024'
+  doi: 10.32614/CRAN.package.grDevices
 - type: software
   title: khroma
   abstract: 'khroma: Colour Schemes for Scientific Data Visualization'
-  notes: Suggests
+  notes: Imports
   url: https://packages.tesselle.org/khroma/
   repository: https://CRAN.R-project.org/package=khroma
   authors:
@@ -119,6 +152,19 @@ references:
     orcid: https://orcid.org/0000-0001-5759-4944
     affiliation: Université Bordeaux Montaigne
   year: '2024'
+  doi: 10.32614/CRAN.package.khroma
+  version: '>= 1.13.0'
+- type: software
+  title: methods
+  abstract: 'R: A Language and Environment for Statistical Computing'
+  notes: Imports
+  authors:
+  - name: R Core Team
+  institution:
+    name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2024'
+  doi: 10.32614/CRAN.package.methods
 - type: software
   title: knitr
   abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
@@ -131,6 +177,7 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0003-0645-5666
   year: '2024'
+  doi: 10.32614/CRAN.package.knitr
 - type: software
   title: markdown
   abstract: 'markdown: Render Markdown with ''commonmark'''
@@ -147,6 +194,7 @@ references:
   - family-names: Horner
     given-names: Jeffrey
   year: '2024'
+  doi: 10.32614/CRAN.package.markdown
 - type: software
   title: rsvg
   abstract: 'rsvg: Render SVG Images into PDF, PNG, (Encapsulated) PostScript, or
@@ -160,6 +208,7 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0002-4035-0289
   year: '2024'
+  doi: 10.32614/CRAN.package.rsvg
 - type: software
   title: svglite
   abstract: 'svglite: An ''SVG'' Graphics Device'
@@ -187,6 +236,7 @@ references:
     given-names: Vaudor
     email: [email protected]
   year: '2024'
+  doi: 10.32614/CRAN.package.svglite
 - type: software
   title: tinysnapshot
   abstract: 'tinysnapshot: Snapshots for Unit Tests using the ''tinytest'' Framework'
@@ -199,6 +249,7 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0003-2042-7063
   year: '2024'
+  doi: 10.32614/CRAN.package.tinysnapshot
 - type: software
   title: tinytest
   abstract: 'tinytest: Lightweight and Feature Complete Unit Testing Framework'
@@ -212,44 +263,5 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0002-9807-4686
   year: '2024'
-identifiers:
-- description: The concept DOI.
-  type: doi
-  value: 10.5281/zenodo.4478530
-- description: The versioned DOI for version 0.1.0.
-  type: doi
-  value: 10.5281/zenodo.4478531
-- description: The versioned DOI for version 0.2.0.
-  type: doi
-  value: 10.5281/zenodo.4709122
-- description: The versioned DOI for version 0.2.1.
-  type: doi
-  value: 10.5281/zenodo.4769401
-- description: The versioned DOI for version 0.2.2.
-  type: doi
-  value: 10.5281/zenodo.5515458
-- description: The versioned DOI for version 0.3.0.
-  type: doi
-  value: 10.5281/zenodo.6993004
-- description: The versioned DOI for version 0.3.1.
-  type: doi
-  value: 10.5281/zenodo.7798592
-- description: The versioned DOI for version 0.4.0.
-  type: doi
-  value: 10.5281/zenodo.8277200
-- description: The versioned DOI for version 0.4.1.
-  type: doi
-  value: 10.5281/zenodo.10022325
-- description: The versioned DOI for version 0.5.0.
-  type: doi
-  value: 10.5281/zenodo.10207582
-- description: The versioned DOI for version 0.6.0.
-  type: doi
-  value: 10.5281/zenodo.10696035
-- description: The versioned DOI for version 0.7.0.
-  type: doi
-  value: 10.5281/zenodo.10948604
-- description: The versioned DOI for version 0.8.0.
-  type: doi
-  value: 10.5281/zenodo.11518715
+  doi: 10.32614/CRAN.package.tinytest
 
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: dimensio
 Title: Multivariate Data Analysis
-Version: 0.8.0.9000
+Version: 0.8.1
 Authors@R: c(
     person("Nicolas", "Frerebeau", , "[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-5759-4944", affiliation = "Université Bordeaux Montaigne")),
@@ -26,7 +26,7 @@ BugReports: https://github.com/tesselle/dimensio/issues
 Depends: 
     R (>= 3.5)
 Imports: 
-    arkhe (>= 1.6.0),
+    arkhe (>= 1.7.0),
     graphics,
     grDevices,
     khroma (>= 1.13.0),
@@ -43,7 +43,7 @@ VignetteBuilder:
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Collate: 
     'AllClasses.R'
     'AllGenerics.R'

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,6 @@
-# dimensio 0.8.0.9000
+# dimensio 0.8.1
+## Internals
+* Use palette functions from **khroma**.
 
 # dimensio 0.8.0
 ## Enhancements

diff --git a/R/dimensio-package.R b/R/dimensio-package.R
@@ -2,7 +2,7 @@
 #' \tabular{ll}{
 #'  **Package:** \tab dimensio \cr
 #'  **Type:** \tab Package \cr
-#'  **Version:** \tab 0.8.0 \cr
+#'  **Version:** \tab 0.8.1 \cr
 #'  **License:** \tab GPL-3 \cr
 #'  **Zenodo:** \tab \doi{10.5281/zenodo.4478530} \cr
 #' }

diff --git a/README.Rmd b/README.Rmd
@@ -63,10 +63,7 @@ remotes::install_github("tesselle/dimensio")
 ## Usage
 
 ```{r packages-load}
-## Install extra packages (if needed)
-# install.packages("khroma") # Color schemes
-
-## Load packages
+## Load package
 library(dimensio)
 ```
 
@@ -114,7 +111,6 @@ biplot(X, type = "form")
 viz_individuals(
   x = X, 
   highlight = iris$Species, 
-  symbol = 16,
   color = c("#004488", "#DDAA33", "#BB5566")
 )
 ## Add ellipses
@@ -131,7 +127,6 @@ viz_individuals(
   highlight = iris$Petal.Length,
   color = khroma::color("iridescent")(255), 
   size = c(1, 2),
-  symbol = 16
 )
 ```
 

diff --git a/README.md b/README.md
@@ -57,7 +57,7 @@ To cite dimensio in publications use:
 
 Frerebeau N (2024). *dimensio: Multivariate Data Analysis*. Université
 Bordeaux Montaigne, Pessac, France. <doi:10.5281/zenodo.4478530>
-<https://doi.org/10.5281/zenodo.4478530>, R package version 0.8.0,
+<https://doi.org/10.5281/zenodo.4478530>, R package version 0.8.1,
 <https://packages.tesselle.org/dimensio/>.
 
 This package is a part of the tesselle project
@@ -82,10 +82,7 @@ remotes::install_github("tesselle/dimensio")
 ## Usage
 
 ``` r
-## Install extra packages (if needed)
-# install.packages("khroma") # Color schemes
-
-## Load packages
+## Load package
 library(dimensio)
 ```
 
@@ -145,7 +142,6 @@ biplot(X, type = "form")
 viz_individuals(
   x = X, 
   highlight = iris$Species, 
-  symbol = 16,
   color = c("#004488", "#DDAA33", "#BB5566")
 )
 ## Add ellipses
@@ -162,7 +158,6 @@ viz_individuals(
   highlight = iris$Petal.Length,
   color = khroma::color("iridescent")(255), 
   size = c(1, 2),
-  symbol = 16
 )
 ```
 

diff --git a/codemeta.json b/codemeta.json
@@ -8,13 +8,13 @@
   "codeRepository": "https://github.com/tesselle/dimensio",
   "issueTracker": "https://github.com/tesselle/dimensio/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "0.8.0",
+  "version": "0.8.1",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
     "url": "https://r-project.org"
   },
-  "runtimePlatform": "R version 4.4.0 (2024-04-24)",
+  "runtimePlatform": "R version 4.4.1 (2024-06-14)",
   "provider": {
     "@id": "https://cran.r-project.org",
     "@type": "Organization",
@@ -66,18 +66,6 @@
     }
   ],
   "softwareSuggestions": [
-    {
-      "@type": "SoftwareApplication",
-      "identifier": "khroma",
-      "name": "khroma",
-      "provider": {
-        "@id": "https://cran.r-project.org",
-        "@type": "Organization",
-        "name": "Comprehensive R Archive Network (CRAN)",
-        "url": "https://cran.r-project.org"
-      },
-      "sameAs": "https://CRAN.R-project.org/package=khroma"
-    },
     {
       "@type": "SoftwareApplication",
       "identifier": "knitr",
@@ -162,7 +150,7 @@
       "@type": "SoftwareApplication",
       "identifier": "arkhe",
       "name": "arkhe",
-      "version": ">= 1.6.0",
+      "version": ">= 1.7.0",
       "provider": {
         "@id": "https://cran.r-project.org",
         "@type": "Organization",
@@ -182,13 +170,26 @@
       "name": "grDevices"
     },
     "5": {
+      "@type": "SoftwareApplication",
+      "identifier": "khroma",
+      "name": "khroma",
+      "version": ">= 1.13.0",
+      "provider": {
+        "@id": "https://cran.r-project.org",
+        "@type": "Organization",
+        "name": "Comprehensive R Archive Network (CRAN)",
+        "url": "https://cran.r-project.org"
+      },
+      "sameAs": "https://CRAN.R-project.org/package=khroma"
+    },
+    "6": {
       "@type": "SoftwareApplication",
       "identifier": "methods",
       "name": "methods"
     },
     "SystemRequirements": null
   },
-  "fileSize": "1139.883KB",
+  "fileSize": "1119.212KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
@@ -203,7 +204,7 @@
       "name": "{dimensio: Multivariate Data Analysis}",
       "identifier": "10.5281/zenodo.4478530",
       "url": "https://packages.tesselle.org/dimensio/",
-      "description": "R package version 0.8.0",
+      "description": "R package version 0.8.1",
       "@id": "https://doi.org/10.5281/zenodo.4478530",
       "sameAs": "https://doi.org/10.5281/zenodo.4478530"
     }