Merge branch 'cc-docker'

.gitignore

@@ -2,5 +2,4 @@ _*
 _*/
 Manifest.toml
 data/
-data
-VUBLinter.jl/docs/build
+docs/build

README.md

@@ -0,0 +1,28 @@
+# VUBLinter.jl
+
+A data linter written in Julia at the Vrije Universiteit Brussel.
+
+[![License](http://img.shields.io/badge/license-GPL-brightgreen.svg?style=flat)](LICENSE.md)
+[![](https://img.shields.io/badge/docs-dev-blue.svg)](https://zgornel.github.io/VUBLinter/dev)
+
+
+## Installation
+
+The installation can be done by manually by cloning the repository or installing it through the julia `REPL`.
+
+
+## License
+
+This code has an GPL license and therefore it is free as beer.
+
+
+## Reporting Bugs
+
+Please [file an issue](https://github.com/zgornel/VUBLinter.jl/issues/new) to report a bug or request a feature.
+
+
+## References
+
+[1] https://en.wikipedia.org/wiki/Lint_(software)
+
+For other interesting data linting solutions, check out also [this work](https://github.com/brain-research/data-linter) from Google brain research.

apps/vublinter/Project.toml

@@ -0,0 +1,8 @@
+name = "vublinter"
+uuid = "1c60c992-bb9d-4404-95b0-08c73534b203"
+authors = ["Corneliu Cofaru <[email protected]>"]
+version = "0.1.0"
+
+[deps]
+ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"
+Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"

apps/vublinter/precompile.jl

@@ -0,0 +1,4 @@
+using vublinter
+
+push!(ARGS, "arg")
+vublinter.julia_main()

VUBLinter.jl/vublinter.jl → apps/vublinter/src/vublinter.jl

@@ -2,7 +2,9 @@
 #
 module vublinter
 
-Base.set_active_project(abspath(joinpath(dirname(@__FILE__), "Project.toml")))
+using Pkg
+project_root_path = abspath(joinpath(splitpath(@__FILE__)[1:end-4]...))
+Pkg.activate(project_root_path)
 
 using Logging
 using ArgParse

docker/Dockerfile.alpine

@@ -9,9 +9,8 @@ RUN mkdir -p /workspace
 
 # Copy binaries
 WORKDIR /
-COPY ./VUBLinter.jl ./VUBLinter.jl
+COPY ./ ./
 
 
 # Prime dependencies for top level script
-WORKDIR /VUBLinter.jl
-RUN julia -e 'using Pkg; Pkg.activate("."); Pkg.test()'
+WORKDIR /

docker/Dockerfile.manjaro

@@ -1,20 +1,11 @@
 # ArchLinux based commands
 FROM manjarolinux/base:20240804
 RUN pacman -Syyu --noconfirm && \
-    pacman -S --noconfirm julia && \
+    pacman -S --noconfirm curl && \
     pacman -Scc --noconfirm && \
     rm -f /var/cache/pacman/pkg/*
 
 # make directories
 RUN mkdir -p /tmp
 RUN mkdir -p /output
 RUN mkdir -p /workspace
-
-# Copy binaries
-WORKDIR /
-COPY ./VUBLinter.jl ./VUBLinter.jl
-
-
-# Prime dependencies for top level script
-WORKDIR /VUBLinter.jl
-RUN julia -e 'using Pkg; Pkg.activate("."); Pkg.test()'

VUBLinter.jl/scripts/simple_run.jl → scripts/simple_run.jl

@@ -30,7 +30,7 @@ for (srow, drow) in duplicates
 end
 code = "apply_some_classifier"  # some sample code, will activate only the missing rule
 
-kbpath = expanduser("~/vub/code/vublinter/VUBLinter.jl/knowledge/linting.toml")
+kbpath = joinpath(dirname(@__FILE__), "..", "knowledge", "linting.toml")
 kb = VUBLinter.kb_load(kbpath)
 
 # First case, print to stdout linting on data

vublinterw.jl

@@ -0,0 +1,21 @@
+module vublinterw
+
+# The actual entrypoint is apps/vublinter/src/vublinter.jl
+const VUBLINTERPATH = abspath(joinpath(@__DIR__, "apps", "vublinter", "src", "vublinter.jl"))
+include(VUBLINTERPATH)  # adds module vublinter
+
+import Pkg, UUIDs
+prj = Pkg.project()
+if prj.name != "VUBLinter" || prj.uuid != UUIDs.UUID("7795ac26-99bd-44b7-aa9b-4d57ee2553a8")
+    @warn "Something is off, vublinter should have already activated the project environment."
+    Pkg.activate(@__DIR__)  # activates current directory (VUBLinter project directory) only if not already activated by vublinter
+    Pkg.instantiate()
+end
+
+main_script_file = abspath(PROGRAM_FILE)
+
+if occursin("debugger", main_script_file) || main_script_file == @__FILE__
+    vublinter.real_main()
+end
+
+end  # module