Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Implement machine learning prediction #75

Merged
merged 26 commits into from
Aug 31, 2023
Merged

Conversation

rvhonorato
Copy link
Member

@rvhonorato rvhonorato commented Aug 30, 2023

This PR adds the feature to use a machine-learning based approach using the results of the predictors as features.

Adds keras_classifier_scriber_ispred4_sppider_csm_potential_scannet model

@rvhonorato rvhonorato self-assigned this Aug 30, 2023
@rvhonorato rvhonorato added the enhancement New feature or request label Aug 30, 2023
@rvhonorato rvhonorato marked this pull request as ready for review August 30, 2023 15:32
@codecov
Copy link

codecov bot commented Aug 31, 2023

Codecov Report

Patch coverage: 89.03% and project coverage change: +0.63% 🎉

Comparison is base (25c807c) 75.85% compared to head (89a6fd4) 76.48%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main      #75      +/-   ##
==========================================
+ Coverage   75.85%   76.48%   +0.63%     
==========================================
  Files          26       28       +2     
  Lines        1354     1428      +74     
==========================================
+ Hits         1027     1092      +65     
- Misses        327      336       +9     
Flag Coverage Δ
unittests 76.48% <89.03%> (+0.63%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files Changed Coverage Δ
setup.py 0.00% <ø> (ø)
src/cport/modules/predict.py 77.78% <77.78%> (ø)
tests/test_predict.py 96.56% <96.56%> (ø)
src/cport/modules/ispred4.py 74.36% <100.00%> (ø)
src/cport/modules/predictprotein_api.py 79.37% <100.00%> (ø)
src/cport/modules/scannet.py 62.83% <100.00%> (+1.49%) ⬆️
src/cport/modules/sppider.py 78.09% <100.00%> (ø)
src/cport/modules/utils.py 73.65% <100.00%> (+0.55%) ⬆️
src/cport/modules/whiscy.py 44.80% <100.00%> (+1.79%) ⬆️

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@rvhonorato rvhonorato changed the title Model implementation Implement machine learning prediction Aug 31, 2023
@rvhonorato
Copy link
Member Author

@AldovdN please add some more information about how the model was trained as a new comment here (:

@rvhonorato rvhonorato merged commit 171c70f into main Aug 31, 2023
@rvhonorato rvhonorato deleted the model-implementation branch August 31, 2023 11:35
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants