Code

Implement machine learning prediction#75

Code

Merged

rvhonorato merged 26 commits intomainhaddocking/cport:mainfrom model-implementationhaddocking/cport:model-implementationCopy head branch name to clipboardAug 31, 2023

+283-29

Commits

Commits on Jan 20, 2023

• added trained model and basic prediction function

  AldovdN

  committed
  96cdfe7

  Copy full SHA for 96cdfe7

Commits on Jan 26, 2023

• changed the predictors used to match the model

  AldovdN

  committed
  9f30019

  Copy full SHA for 9f30019

• added model prediction to output

  AldovdN

  committed
  43c4b23

  Copy full SHA for 43c4b23

• linting

  AldovdN

  committed
  3f2e6a9

  Copy full SHA for 3f2e6a9

• Fixed model_path to fix loading the model

  AldovdN

  committed
  f519c67

  Copy full SHA for f519c67

Commits on Jan 27, 2023

• fixed model input and output of results

  AldovdN

  committed
  8110f89

  Copy full SHA for 8110f89

Commits on Feb 9, 2023

• output file for prediction and confidence added

  AldovdN

  committed
  72696f0

  Copy full SHA for 72696f0

Commits on Aug 30, 2023

• Merge branch 'main' into model-implementation

  rvhonorato

  committed
  c211552

  Copy full SHA for c211552

• minor tweaks to cli.py

  rvhonorato

  committed
  965b251

  Copy full SHA for 965b251

• linting

  rvhonorato

  committed
  176c377

  Copy full SHA for 176c377

Commits on Aug 31, 2023

• Merge branch 'main' into model-implementation

  rvhonorato

  committed
  445bcc3

  Copy full SHA for 445bcc3

• Merge branch 'main' into model-implementation

  rvhonorato

  committed
  fe335eb

  Copy full SHA for fe335eb

• Merge branch 'main' into model-implementation

  rvhonorato

  committed
  58bb19d

  Copy full SHA for 58bb19d

• update version

  rvhonorato

  committed
  e0df080

  Copy full SHA for e0df080

• update head reference

  rvhonorato

  committed
  93fe876

  Copy full SHA for 93fe876

• Merge branch 'main' into model-implementation

  rvhonorato

  committed
  6337b07

  Copy full SHA for 6337b07

• update cli

  rvhonorato

  committed
  7b098a2

  Copy full SHA for 7b098a2

• update requirements

  rvhonorato

  committed
  976fa23

  Copy full SHA for 976fa23

• only run ML prediction if all features are present

  rvhonorato

  committed
  2fd6545

  Copy full SHA for 2fd6545

• ignore biopython warnings

  rvhonorato

  committed
  e232faf

  Copy full SHA for e232faf

• refactor predict.py

  rvhonorato

  committed
  260a8dd

  Copy full SHA for 260a8dd

• linting

  rvhonorato

  committed
  3209db2

  Copy full SHA for 3209db2

• tweak cli

  rvhonorato

  committed
  99ee627

  Copy full SHA for 99ee627

• refactor format_predictions

  rvhonorato

  committed
  c8f1f26

  Copy full SHA for c8f1f26

• add test_predict

  rvhonorato

  committed
  e42df4b

  Copy full SHA for e42df4b

• linting

  rvhonorato

  committed
  89a6fd4

  Copy full SHA for 89a6fd4